Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
Usp40Q8BWR4 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Usp40Q8BWR4 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Usp40Q8BWR4 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Usp40Q8BWR4 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Usp40Q8BWR4 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Gm37015-201ENSMUST00000192763 1521 ntBASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Usp40Q8BWR4 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Gm7067-201ENSMUST00000207698 1249 ntBASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Gm8463-201ENSMUST00000208573 613 ntBASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Gm5356-201ENSMUST00000093326 615 ntBASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Gm9867-201ENSMUST00000192212 2647 ntBASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp40Q8BWR4 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Mir692-1-201ENSMUST00000102263 109 ntBASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Gm13689-201ENSMUST00000119360 685 ntBASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Gm15824-201ENSMUST00000119516 955 ntBASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp40Q8BWR4 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Gm15429-201ENSMUST00000151268 798 ntBASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Gm18062-201ENSMUST00000208020 547 ntBASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Gm18055-201ENSMUST00000208254 547 ntBASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Gm21038-201ENSMUST00000222205 1383 ntBASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 AL645783.1-201ENSMUST00000221416 1832 ntBASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Usp40Q8BWR4 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms