Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
Sh3rf1Q69ZI1 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.11
Sh3rf1Q69ZI1 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Trav13-3-201ENSMUST00000117226 336 ntBASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 AC130669.1-201ENSMUST00000228537 1672 ntBASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sh3rf1Q69ZI1 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Gm42872-201ENSMUST00000200026 1967 ntBASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Grk6-205ENSMUST00000224653 2976 ntBASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Gm37411-201ENSMUST00000194180 2282 ntBASIC14.38□□□□□ -0.11
Sh3rf1Q69ZI1 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 AC025913.2-201ENSMUST00000220136 1766 ntBASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 AC140397.2-201ENSMUST00000224213 834 ntBASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Gm10154-201ENSMUST00000084445 354 ntBASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sh3rf1Q69ZI1 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 103.4 ms