Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC17.38■□□□□ 0.37
Trim27Q62158 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC17.38■□□□□ 0.37
Trim27Q62158 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trim27Q62158 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC17.38■□□□□ 0.37
Trim27Q62158 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC17.38■□□□□ 0.37
Trim27Q62158 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
Trim27Q62158 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC17.38■□□□□ 0.37
Trim27Q62158 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trim27Q62158 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trim27Q62158 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Trim27Q62158 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trim27Q62158 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim27Q62158 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trim27Q62158 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trim27Q62158 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim27Q62158 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim27Q62158 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC17.37■□□□□ 0.37
Trim27Q62158 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim27Q62158 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trim27Q62158 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim27Q62158 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim27Q62158 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim27Q62158 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
Trim27Q62158 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Gm25144-201ENSMUST00000179561 110 ntBASIC17.36■□□□□ 0.37
Trim27Q62158 Gm25352-201ENSMUST00000179815 110 ntBASIC17.36■□□□□ 0.37
Trim27Q62158 Gm37714-201ENSMUST00000194742 342 ntBASIC17.36■□□□□ 0.37
Trim27Q62158 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Trim27Q62158 Gm18027-201ENSMUST00000218947 619 ntBASIC17.36■□□□□ 0.37
Trim27Q62158 AC121804.3-201ENSMUST00000223420 295 ntBASIC17.36■□□□□ 0.37
Trim27Q62158 AC156016.3-201ENSMUST00000228623 344 ntBASIC17.36■□□□□ 0.37
Trim27Q62158 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Gm19863-201ENSMUST00000192480 2218 ntBASIC17.36■□□□□ 0.37
Trim27Q62158 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC17.36■□□□□ 0.37
Trim27Q62158 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim27Q62158 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim27Q62158 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim27Q62158 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
Trim27Q62158 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim27Q62158 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim27Q62158 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim27Q62158 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim27Q62158 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim27Q62158 Gm13223-201ENSMUST00000118609 747 ntBASIC17.35■□□□□ 0.37
Trim27Q62158 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim27Q62158 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC17.35■□□□□ 0.37
Trim27Q62158 Gm37171-201ENSMUST00000192636 1185 ntBASIC17.35■□□□□ 0.37
Trim27Q62158 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim27Q62158 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms