Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Gm6159-201ENSMUST00000191249 1724 ntBASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Shd-206ENSMUST00000225145 998 ntBASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Gm9109-201ENSMUST00000120254 1405 ntBASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Gm45546-201ENSMUST00000211053 2394 ntBASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3bQ3ULL6 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Gm21451-201ENSMUST00000111062 2775 ntBASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Gm15920-201ENSMUST00000118998 402 ntBASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Mir1897-201ENSMUST00000122581 272 ntBASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Gm44872-201ENSMUST00000207864 420 ntBASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3bQ3ULL6 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Gm17837-201ENSMUST00000186435 985 ntBASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Gm38294-201ENSMUST00000192831 381 ntBASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Upf3bQ3ULL6 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.02
Upf3bQ3ULL6 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms