Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 AC131068.2-201ENSMUST00000226175 1453 ntBASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Mup-ps23-201ENSMUST00000118063 630 ntBASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Gm15429-201ENSMUST00000151268 798 ntBASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Gm11557-201ENSMUST00000120200 1008 ntBASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Gm15376-201ENSMUST00000122258 783 ntBASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Gm8835-201ENSMUST00000173096 1169 ntBASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Gm24420-201ENSMUST00000176676 59 ntBASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Gm8927-201ENSMUST00000181978 981 ntBASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Ighv1-51-201ENSMUST00000192903 354 ntBASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Gm3222-201ENSMUST00000071282 990 ntBASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3aQ3ULJ3 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Upf3aQ3ULJ3 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Upf3aQ3ULJ3 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Upf3aQ3ULJ3 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Upf3aQ3ULJ3 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Upf3aQ3ULJ3 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Gm26464-201ENSMUST00000157094 305 ntBASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Gm27486-201ENSMUST00000184923 80 ntBASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Gm7287-201ENSMUST00000205267 602 ntBASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Gm37305-201ENSMUST00000195714 4279 ntBASIC14.83□□□□□ -0.04
Upf3aQ3ULJ3 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms