Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Gm5874-201ENSMUST00000096101 508 ntBASIC11.66□□□□□ -0.54
Trim63Q38HM4 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim63Q38HM4 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Gm37795-201ENSMUST00000194216 2459 ntBASIC11.66□□□□□ -0.54
Trim63Q38HM4 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Trim63Q38HM4 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim63Q38HM4 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC11.65□□□□□ -0.54
Trim63Q38HM4 AC122291.1-201ENSMUST00000228937 5748 ntBASIC11.65□□□□□ -0.54
Trim63Q38HM4 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Gm37057-201ENSMUST00000192624 1916 ntBASIC11.65□□□□□ -0.54
Trim63Q38HM4 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Gm14722-201ENSMUST00000118943 689 ntBASIC11.65□□□□□ -0.54
Trim63Q38HM4 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC11.65□□□□□ -0.54
Trim63Q38HM4 AC160980.1-201ENSMUST00000224136 970 ntBASIC11.65□□□□□ -0.54
Trim63Q38HM4 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 BC043934-202ENSMUST00000185694 2356 ntBASIC11.65□□□□□ -0.54
Trim63Q38HM4 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim63Q38HM4 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Trim63Q38HM4 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC11.65□□□□□ -0.55
Trim63Q38HM4 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
Trim63Q38HM4 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Trim63Q38HM4 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Gm13158-201ENSMUST00000122007 736 ntBASIC11.64□□□□□ -0.55
Trim63Q38HM4 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 AC154595.3-201ENSMUST00000224579 384 ntBASIC11.64□□□□□ -0.55
Trim63Q38HM4 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Trim63Q38HM4 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 67.4 ms