Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 AC121801.1-201ENSMUST00000225363 1899 ntBASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Gm14057-201ENSMUST00000120631 482 ntBASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Gm8584-201ENSMUST00000171982 758 ntBASIC13.76□□□□□ -0.21
Col28a1Q2UY11 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col28a1Q2UY11 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Gm45003-201ENSMUST00000205875 2158 ntBASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Gm4899-201ENSMUST00000178708 719 ntBASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Gm4691-201ENSMUST00000182339 1000 ntBASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Gm2451-201ENSMUST00000199447 999 ntBASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Gm10290-201ENSMUST00000200451 999 ntBASIC13.75□□□□□ -0.21
Col28a1Q2UY11 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 AC158982.1-201ENSMUST00000228377 901 ntBASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col28a1Q2UY11 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Gm11025-201ENSMUST00000140773 466 ntBASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms