Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC12.22□□□□□ -0.45
Nkx3-1P97436 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Gm15806-201ENSMUST00000120696 955 ntBASIC12.22□□□□□ -0.45
Nkx3-1P97436 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.22□□□□□ -0.45
Nkx3-1P97436 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Gm6283-201ENSMUST00000182369 1000 ntBASIC12.22□□□□□ -0.45
Nkx3-1P97436 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Gm4804-201ENSMUST00000182234 999 ntBASIC12.21□□□□□ -0.45
Nkx3-1P97436 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC12.21□□□□□ -0.45
Nkx3-1P97436 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Nkx3-1P97436 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC12.21□□□□□ -0.45
Nkx3-1P97436 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Gm37728-201ENSMUST00000195025 2292 ntBASIC12.21□□□□□ -0.46
Nkx3-1P97436 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Nkx3-1P97436 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gm9768-201ENSMUST00000206007 2861 ntBASIC12.2□□□□□ -0.46
Nkx3-1P97436 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gm15824-201ENSMUST00000119516 955 ntBASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gm13829-201ENSMUST00000119600 138 ntBASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gm12341-201ENSMUST00000119724 503 ntBASIC12.2□□□□□ -0.46
Nkx3-1P97436 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gm12960-201ENSMUST00000120017 1066 ntBASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gm9002-201ENSMUST00000178437 499 ntBASIC12.2□□□□□ -0.46
Nkx3-1P97436 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms