Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Gm6159-201ENSMUST00000191249 1724 ntBASIC11.6□□□□□ -0.55
Sdc1P18828 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC11.59□□□□□ -0.55
Sdc1P18828 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Gm4459-201ENSMUST00000118750 468 ntBASIC11.59□□□□□ -0.55
Sdc1P18828 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC11.59□□□□□ -0.55
Sdc1P18828 Gm44454-201ENSMUST00000198541 138 ntBASIC11.59□□□□□ -0.55
Sdc1P18828 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC11.59□□□□□ -0.55
Sdc1P18828 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Sdc1P18828 CT010506.4-201ENSMUST00000225457 351 ntBASIC11.59□□□□□ -0.55
Sdc1P18828 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Sdc1P18828 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC11.59□□□□□ -0.55
Sdc1P18828 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC11.59□□□□□ -0.55
Sdc1P18828 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Sdc1P18828 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC11.59□□□□□ -0.55
Sdc1P18828 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
Sdc1P18828 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sdc1P18828 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Sdc1P18828 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC11.58□□□□□ -0.55
Sdc1P18828 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Sdc1P18828 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC11.58□□□□□ -0.56
Sdc1P18828 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Sdc1P18828 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Sdc1P18828 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Sdc1P18828 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Sdc1P18828 Gm13559-201ENSMUST00000120476 863 ntBASIC11.58□□□□□ -0.56
Sdc1P18828 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC11.58□□□□□ -0.56
Sdc1P18828 Rprl3-201ENSMUST00000157400 290 ntBASIC11.58□□□□□ -0.56
Sdc1P18828 Gm22697-201ENSMUST00000175194 63 ntBASIC11.58□□□□□ -0.56
Sdc1P18828 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Sdc1P18828 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Arhgef33-211ENSMUST00000225658 473 ntBASIC11.58□□□□□ -0.56
Sdc1P18828 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Sdc1P18828 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC11.58□□□□□ -0.56
Sdc1P18828 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Sdc1P18828 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Sdc1P18828 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC11.58□□□□□ -0.56
Sdc1P18828 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sdc1P18828 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
Sdc1P18828 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC11.57□□□□□ -0.56
Sdc1P18828 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Sdc1P18828 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.56
Sdc1P18828 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms