Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC16.37■□□□□ 0.21
Col1a1P11087 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Col1a1P11087 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC16.37■□□□□ 0.21
Col1a1P11087 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC16.37■□□□□ 0.21
Col1a1P11087 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC16.37■□□□□ 0.21
Col1a1P11087 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC16.37■□□□□ 0.21
Col1a1P11087 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC16.37■□□□□ 0.21
Col1a1P11087 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC16.37■□□□□ 0.21
Col1a1P11087 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Col1a1P11087 Itm2b-204ENSMUST00000228637 783 ntBASIC16.37■□□□□ 0.21
Col1a1P11087 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Col1a1P11087 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Col1a1P11087 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Col1a1P11087 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Col1a1P11087 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col1a1P11087 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC16.36■□□□□ 0.21
Col1a1P11087 Gm26927-201ENSMUST00000182385 965 ntBASIC16.36■□□□□ 0.21
Col1a1P11087 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 Gm4857-201ENSMUST00000192718 785 ntBASIC16.36■□□□□ 0.21
Col1a1P11087 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC16.36■□□□□ 0.21
Col1a1P11087 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Col1a1P11087 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 Gm5620-201ENSMUST00000077991 1348 ntBASIC16.36■□□□□ 0.21
Col1a1P11087 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col1a1P11087 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Col1a1P11087 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC16.35■□□□□ 0.21
Col1a1P11087 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Col1a1P11087 Gm27516-201ENSMUST00000184237 98 ntBASIC16.35■□□□□ 0.21
Col1a1P11087 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC16.35■□□□□ 0.21
Col1a1P11087 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Col1a1P11087 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 AC121801.1-201ENSMUST00000225363 1899 ntBASIC16.35■□□□□ 0.21
Col1a1P11087 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC16.35■□□□□ 0.21
Col1a1P11087 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC16.35■□□□□ 0.21
Col1a1P11087 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Col1a1P11087 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Col1a1P11087 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Gm16425-201ENSMUST00000118143 3130 ntBASIC16.35■□□□□ 0.21
Col1a1P11087 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC16.35■□□□□ 0.21
Col1a1P11087 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC16.35■□□□□ 0.21
Col1a1P11087 Gm37008-201ENSMUST00000195712 319 ntBASIC16.35■□□□□ 0.21
Col1a1P11087 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC16.35■□□□□ 0.21
Col1a1P11087 Gm43758-201ENSMUST00000199500 367 ntBASIC16.35■□□□□ 0.21
Col1a1P11087 AC140406.1-201ENSMUST00000226481 465 ntBASIC16.35■□□□□ 0.21
Col1a1P11087 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC16.35■□□□□ 0.21
Col1a1P11087 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Gm9347-201ENSMUST00000211473 1607 ntBASIC16.35■□□□□ 0.21
Col1a1P11087 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col1a1P11087 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms