Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Ighv5-13-201ENSMUST00000193550 290 ntBASIC15.35■□□□□ 0.05
Trim54Q9ERP3 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 AC154687.2-201ENSMUST00000223853 640 ntBASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim54Q9ERP3 AC148324.1-201ENSMUST00000219034 4240 ntBASIC15.35■□□□□ 0.05
Trim54Q9ERP3 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 AC166574.6-201ENSMUST00000227889 1806 ntBASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Gm11478-201ENSMUST00000117851 599 ntBASIC15.34■□□□□ 0.05
Trim54Q9ERP3 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim54Q9ERP3 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim54Q9ERP3 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim54Q9ERP3 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC15.33■□□□□ 0.05
Trim54Q9ERP3 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trim54Q9ERP3 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trim54Q9ERP3 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trim54Q9ERP3 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim54Q9ERP3 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim54Q9ERP3 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim54Q9ERP3 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Gm15957-201ENSMUST00000118893 974 ntBASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 AC154806.6-201ENSMUST00000228192 202 ntBASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim54Q9ERP3 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC15.32■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 67 ms