Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Gm16198-201ENSMUST00000118766 670 ntBASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Gm25948-201ENSMUST00000175334 112 ntBASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Gm43125-201ENSMUST00000201724 730 ntBASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Gm5628-201ENSMUST00000222318 1049 ntBASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Rpph1-201ENSMUST00000175096 319 ntBASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Fgf17-202ENSMUST00000227123 1336 ntBASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sh3rf1Q69ZI1 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Sh3rf1Q69ZI1 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 74.5 ms