Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trim28Q62318 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC18.3■□□□□ 0.52
Trim28Q62318 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC18.3■□□□□ 0.52
Trim28Q62318 Gm2445-201ENSMUST00000182798 989 ntBASIC18.3■□□□□ 0.52
Trim28Q62318 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC18.3■□□□□ 0.52
Trim28Q62318 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
Trim28Q62318 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trim28Q62318 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim28Q62318 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Trim28Q62318 Zkscan14-203ENSMUST00000198959 2243 ntBASIC18.29■□□□□ 0.52
Trim28Q62318 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Gm12485-201ENSMUST00000119641 291 ntBASIC18.29■□□□□ 0.52
Trim28Q62318 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC18.29■□□□□ 0.52
Trim28Q62318 Gm14730-201ENSMUST00000122378 1045 ntBASIC18.29■□□□□ 0.52
Trim28Q62318 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC18.29■□□□□ 0.52
Trim28Q62318 Gm7498-201ENSMUST00000203282 1084 ntBASIC18.29■□□□□ 0.52
Trim28Q62318 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC18.29■□□□□ 0.52
Trim28Q62318 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
Trim28Q62318 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Gm24447-201ENSMUST00000083977 338 ntBASIC18.29■□□□□ 0.52
Trim28Q62318 Gm43205-201ENSMUST00000198622 1968 ntBASIC18.29■□□□□ 0.52
Trim28Q62318 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim28Q62318 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Trim28Q62318 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim28Q62318 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim28Q62318 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim28Q62318 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC18.28■□□□□ 0.52
Trim28Q62318 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC18.28■□□□□ 0.52
Trim28Q62318 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC18.28■□□□□ 0.52
Trim28Q62318 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC18.28■□□□□ 0.52
Trim28Q62318 Gm17150-201ENSMUST00000165577 381 ntBASIC18.28■□□□□ 0.52
Trim28Q62318 Gm8602-201ENSMUST00000184045 607 ntBASIC18.28■□□□□ 0.52
Trim28Q62318 Gm37748-201ENSMUST00000194379 1140 ntBASIC18.28■□□□□ 0.52
Trim28Q62318 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim28Q62318 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim28Q62318 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Trim28Q62318 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim28Q62318 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim28Q62318 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 Gm37736-201ENSMUST00000193564 2802 ntBASIC18.27■□□□□ 0.52
Trim28Q62318 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC18.27■□□□□ 0.52
Trim28Q62318 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
Trim28Q62318 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
Trim28Q62318 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC18.27■□□□□ 0.52
Trim28Q62318 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC18.27■□□□□ 0.52
Trim28Q62318 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Trim28Q62318 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.52
Trim28Q62318 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim28Q62318 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC18.27■□□□□ 0.51
Trim28Q62318 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim28Q62318 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim28Q62318 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim28Q62318 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim28Q62318 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim28Q62318 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim28Q62318 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim28Q62318 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim28Q62318 Gm37812-201ENSMUST00000195216 2475 ntBASIC18.26■□□□□ 0.51
Trim28Q62318 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim28Q62318 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim28Q62318 Gm12416-201ENSMUST00000120911 1008 ntBASIC18.26■□□□□ 0.51
Trim28Q62318 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms