Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Gm11524-201ENSMUST00000119349 807 ntBASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 AC192088.1-201ENSMUST00000227561 301 ntBASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Gm13385-201ENSMUST00000121089 220 ntBASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Gm27839-201ENSMUST00000184242 106 ntBASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 AC166349.1-201ENSMUST00000220866 695 ntBASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 AC125117.1-201ENSMUST00000228121 468 ntBASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Gm13034-201ENSMUST00000121342 3177 ntBASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Upf3aQ3ULJ3 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Gm9816-201ENSMUST00000122292 1414 ntBASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.86□□□□□ -0.03
Upf3aQ3ULJ3 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 AC114543.1-201ENSMUST00000226451 1558 ntBASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Carlr-201ENSMUST00000181515 2574 ntBASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Upf3aQ3ULJ3 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms