Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC14.59□□□□□ -0.07
Sox9Q04887 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Sox9Q04887 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Sox9Q04887 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Sox9Q04887 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Sox9Q04887 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Sox9Q04887 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Sox9Q04887 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC14.59□□□□□ -0.07
Sox9Q04887 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Sox9Q04887 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Sox9Q04887 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Sox9Q04887 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.58□□□□□ -0.07
Sox9Q04887 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.58□□□□□ -0.07
Sox9Q04887 Gm21009-201ENSMUST00000197169 1669 ntBASIC14.58□□□□□ -0.07
Sox9Q04887 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Sox9Q04887 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
Sox9Q04887 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.07
Sox9Q04887 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Sox9Q04887 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Sox9Q04887 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Sox9Q04887 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Sox9Q04887 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Sox9Q04887 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Sox9Q04887 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Sox9Q04887 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Sox9Q04887 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Sox9Q04887 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.58□□□□□ -0.08
Sox9Q04887 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Sox9Q04887 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC14.58□□□□□ -0.08
Sox9Q04887 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC14.58□□□□□ -0.08
Sox9Q04887 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC14.58□□□□□ -0.08
Sox9Q04887 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Sox9Q04887 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC14.58□□□□□ -0.08
Sox9Q04887 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC14.58□□□□□ -0.08
Sox9Q04887 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC14.58□□□□□ -0.08
Sox9Q04887 Mir433-201ENSMUST00000093564 124 ntBASIC14.58□□□□□ -0.08
Sox9Q04887 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Sox9Q04887 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Sox9Q04887 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC14.58□□□□□ -0.08
Sox9Q04887 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Sybu-209ENSMUST00000228639 4113 ntBASIC14.58□□□□□ -0.08
Sox9Q04887 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Sox9Q04887 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC14.57□□□□□ -0.08
Sox9Q04887 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC14.57□□□□□ -0.08
Sox9Q04887 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC14.57□□□□□ -0.08
Sox9Q04887 Gm15371-201ENSMUST00000117057 784 ntBASIC14.57□□□□□ -0.08
Sox9Q04887 Gm15376-201ENSMUST00000122258 783 ntBASIC14.57□□□□□ -0.08
Sox9Q04887 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC14.57□□□□□ -0.08
Sox9Q04887 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC14.57□□□□□ -0.08
Sox9Q04887 CT573034.1-201ENSMUST00000222983 313 ntBASIC14.57□□□□□ -0.08
Sox9Q04887 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Sox9Q04887 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Sox9Q04887 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC14.56□□□□□ -0.08
Sox9Q04887 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Gm16342-201ENSMUST00000124025 1025 ntBASIC14.56□□□□□ -0.08
Sox9Q04887 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Sox9Q04887 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms