Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col8a1Q00780 Gm45751-201ENSMUST00000210185 1573 ntBASIC12.09□□□□□ -0.47
Col8a1Q00780 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC12.09□□□□□ -0.47
Col8a1Q00780 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Col8a1Q00780 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Pcgf5-211ENSMUST00000225920 6443 ntBASIC12.08□□□□□ -0.48
Col8a1Q00780 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC12.08□□□□□ -0.48
Col8a1Q00780 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Gm15460-201ENSMUST00000118147 391 ntBASIC12.08□□□□□ -0.48
Col8a1Q00780 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC12.08□□□□□ -0.48
Col8a1Q00780 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC12.08□□□□□ -0.48
Col8a1Q00780 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC12.08□□□□□ -0.48
Col8a1Q00780 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC12.08□□□□□ -0.48
Col8a1Q00780 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Col8a1Q00780 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC12.08□□□□□ -0.48
Col8a1Q00780 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Col8a1Q00780 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC12.08□□□□□ -0.48
Col8a1Q00780 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
Col8a1Q00780 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.08□□□□□ -0.48
Col8a1Q00780 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col8a1Q00780 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Col8a1Q00780 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC12.07□□□□□ -0.48
Col8a1Q00780 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Col8a1Q00780 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Gm27243-201ENSMUST00000183964 521 ntBASIC12.07□□□□□ -0.48
Col8a1Q00780 Gm38241-201ENSMUST00000192641 898 ntBASIC12.07□□□□□ -0.48
Col8a1Q00780 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Col8a1Q00780 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC12.07□□□□□ -0.48
Col8a1Q00780 AC122459.1-201ENSMUST00000228373 885 ntBASIC12.07□□□□□ -0.48
Col8a1Q00780 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Col8a1Q00780 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.07□□□□□ -0.48
Col8a1Q00780 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Col8a1Q00780 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col8a1Q00780 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col8a1Q00780 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col8a1Q00780 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms