Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Cdh11P55288 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cdh11P55288 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC12.95□□□□□ -0.34
Cdh11P55288 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC12.95□□□□□ -0.34
Cdh11P55288 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC12.95□□□□□ -0.34
Cdh11P55288 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
Cdh11P55288 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC12.95□□□□□ -0.34
Cdh11P55288 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC12.95□□□□□ -0.34
Cdh11P55288 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC12.95□□□□□ -0.34
Cdh11P55288 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 AC155252.2-201ENSMUST00000226946 680 ntBASIC12.95□□□□□ -0.34
Cdh11P55288 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Cdh11P55288 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdh11P55288 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Cdh11P55288 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC12.94□□□□□ -0.34
Cdh11P55288 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC12.94□□□□□ -0.34
Cdh11P55288 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Cdh11P55288 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Cdh11P55288 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC12.94□□□□□ -0.34
Cdh11P55288 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
Cdh11P55288 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC12.94□□□□□ -0.34
Cdh11P55288 AC155729.1-201ENSMUST00000227758 544 ntBASIC12.94□□□□□ -0.34
Cdh11P55288 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC12.94□□□□□ -0.34
Cdh11P55288 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Cdh11P55288 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC12.94□□□□□ -0.34
Cdh11P55288 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdh11P55288 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
Cdh11P55288 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Cdh11P55288 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Cdh11P55288 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Cdh11P55288 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC12.93□□□□□ -0.34
Cdh11P55288 Gm11745-201ENSMUST00000121669 448 ntBASIC12.93□□□□□ -0.34
Cdh11P55288 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Cdh11P55288 Gm45612-201ENSMUST00000211320 160 ntBASIC12.93□□□□□ -0.34
Cdh11P55288 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Cdh11P55288 AC154621.1-201ENSMUST00000226155 1119 ntBASIC12.93□□□□□ -0.34
Cdh11P55288 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC12.93□□□□□ -0.34
Cdh11P55288 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Cdh11P55288 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Cdh11P55288 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Cdh11P55288 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Cdh11P55288 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdh11P55288 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdh11P55288 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdh11P55288 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Cdh11P55288 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Cdh11P55288 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdh11P55288 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC12.92□□□□□ -0.34
Cdh11P55288 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Cdh11P55288 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdh11P55288 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms