Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Gm30238-201ENSMUST00000195528 2603 ntBASIC12.84□□□□□ -0.35
Rfx3P48381 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx3P48381 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC12.84□□□□□ -0.35
Rfx3P48381 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx3P48381 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx3P48381 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Rfx3P48381 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Rfx3P48381 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Rfx3P48381 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
Rfx3P48381 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Rfx3P48381 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
Rfx3P48381 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Rfx3P48381 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC12.83□□□□□ -0.36
Rfx3P48381 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC12.83□□□□□ -0.36
Rfx3P48381 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC12.83□□□□□ -0.36
Rfx3P48381 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC12.83□□□□□ -0.36
Rfx3P48381 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC12.83□□□□□ -0.36
Rfx3P48381 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC12.83□□□□□ -0.36
Rfx3P48381 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Rfx3P48381 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 AC090659.1-201ENSMUST00000224334 768 ntBASIC12.83□□□□□ -0.36
Rfx3P48381 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC12.83□□□□□ -0.36
Rfx3P48381 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Rfx3P48381 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx3P48381 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC12.82□□□□□ -0.36
Rfx3P48381 Gm18244-201ENSMUST00000219747 1566 ntBASIC12.82□□□□□ -0.36
Rfx3P48381 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Rfx3P48381 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Rfx3P48381 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Gm17271-201ENSMUST00000165535 355 ntBASIC12.82□□□□□ -0.36
Rfx3P48381 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC12.82□□□□□ -0.36
Rfx3P48381 Gm27525-201ENSMUST00000184465 107 ntBASIC12.82□□□□□ -0.36
Rfx3P48381 Gm45683-201ENSMUST00000210825 1247 ntBASIC12.82□□□□□ -0.36
Rfx3P48381 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Rfx3P48381 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx3P48381 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Rfx3P48381 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Rfx3P48381 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC12.81□□□□□ -0.36
Rfx3P48381 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Rfx3P48381 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC12.81□□□□□ -0.36
Rfx3P48381 Gm2420-202ENSMUST00000202224 2249 ntBASIC12.81□□□□□ -0.36
Rfx3P48381 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Rfx3P48381 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC12.81□□□□□ -0.36
Rfx3P48381 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Gm9947-201ENSMUST00000067599 2920 ntBASIC12.81□□□□□ -0.36
Rfx3P48381 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC12.81□□□□□ -0.36
Rfx3P48381 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms