Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Gm18733-201ENSMUST00000173950 856 ntBASIC13.7□□□□□ -0.22
Tnfsf4P43488 Rpph1-201ENSMUST00000175096 319 ntBASIC13.7□□□□□ -0.22
Tnfsf4P43488 Gm43332-201ENSMUST00000202511 1044 ntBASIC13.7□□□□□ -0.22
Tnfsf4P43488 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Tnfsf4P43488 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Tnfsf4P43488 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 CT030684.1-201ENSMUST00000227292 914 ntBASIC13.69□□□□□ -0.22
Tnfsf4P43488 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 AC121801.1-201ENSMUST00000225363 1899 ntBASIC13.69□□□□□ -0.22
Tnfsf4P43488 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Gm5763-201ENSMUST00000155951 1530 ntBASIC13.69□□□□□ -0.22
Tnfsf4P43488 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.69□□□□□ -0.22
Tnfsf4P43488 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Tnfsf4P43488 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Gm5639-201ENSMUST00000122305 2403 ntBASIC13.68□□□□□ -0.22
Tnfsf4P43488 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Gm44492-201ENSMUST00000197012 141 ntBASIC13.68□□□□□ -0.22
Tnfsf4P43488 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC13.68□□□□□ -0.22
Tnfsf4P43488 Gm15889-202ENSMUST00000212669 2443 ntBASIC13.68□□□□□ -0.22
Tnfsf4P43488 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Tnfsf4P43488 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC13.67□□□□□ -0.22
Tnfsf4P43488 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Tnfsf4P43488 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Tnfsf4P43488 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Tnfsf4P43488 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Tnfsf4P43488 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Tnfsf4P43488 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms