Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col18a1P39061 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col18a1P39061 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col18a1P39061 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col18a1P39061 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col18a1P39061 Gm8862-201ENSMUST00000198379 1346 ntBASIC18.43■□□□□ 0.54
Col18a1P39061 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col18a1P39061 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col18a1P39061 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col18a1P39061 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Gm11331-201ENSMUST00000119764 288 ntBASIC18.42■□□□□ 0.54
Col18a1P39061 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC18.42■□□□□ 0.54
Col18a1P39061 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC18.42■□□□□ 0.54
Col18a1P39061 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Col18a1P39061 Gm8176-201ENSMUST00000191297 1099 ntBASIC18.42■□□□□ 0.54
Col18a1P39061 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC18.42■□□□□ 0.54
Col18a1P39061 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC18.42■□□□□ 0.54
Col18a1P39061 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Gm10782-202ENSMUST00000223775 1480 ntBASIC18.42■□□□□ 0.54
Col18a1P39061 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Gm10434-201ENSMUST00000101158 471 ntBASIC18.42■□□□□ 0.54
Col18a1P39061 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col18a1P39061 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Gm9083-201ENSMUST00000120423 819 ntBASIC18.41■□□□□ 0.54
Col18a1P39061 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC18.41■□□□□ 0.54
Col18a1P39061 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC18.41■□□□□ 0.54
Col18a1P39061 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC18.41■□□□□ 0.54
Col18a1P39061 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC18.41■□□□□ 0.54
Col18a1P39061 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Gm19163-201ENSMUST00000223313 780 ntBASIC18.41■□□□□ 0.54
Col18a1P39061 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Col18a1P39061 Gm43423-201ENSMUST00000198390 2094 ntBASIC18.41■□□□□ 0.54
Col18a1P39061 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Col18a1P39061 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col18a1P39061 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
Col18a1P39061 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col18a1P39061 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC18.4■□□□□ 0.54
Col18a1P39061 Gm4760-201ENSMUST00000119663 1030 ntBASIC18.4■□□□□ 0.54
Col18a1P39061 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col18a1P39061 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC18.4■□□□□ 0.54
Col18a1P39061 Gm42997-202ENSMUST00000200321 985 ntBASIC18.4■□□□□ 0.54
Col18a1P39061 Gm8099-201ENSMUST00000200510 742 ntBASIC18.4■□□□□ 0.54
Col18a1P39061 Gm9826-201ENSMUST00000029124 1299 ntBASIC18.4■□□□□ 0.54
Col18a1P39061 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col18a1P39061 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col18a1P39061 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col18a1P39061 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col18a1P39061 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col18a1P39061 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC18.4■□□□□ 0.54
Col18a1P39061 Gm15276-201ENSMUST00000145953 498 ntBASIC18.4■□□□□ 0.54
Col18a1P39061 Gm7593-201ENSMUST00000187246 644 ntBASIC18.4■□□□□ 0.54
Col18a1P39061 Gm8885-201ENSMUST00000189382 598 ntBASIC18.4■□□□□ 0.54
Col18a1P39061 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Col18a1P39061 Gm44967-201ENSMUST00000207047 631 ntBASIC18.4■□□□□ 0.54
Col18a1P39061 Gm13097-201ENSMUST00000210722 397 ntBASIC18.4■□□□□ 0.54
Col18a1P39061 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col18a1P39061 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col18a1P39061 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col18a1P39061 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
Col18a1P39061 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Gm7467-201ENSMUST00000185173 652 ntBASIC18.39■□□□□ 0.53
Col18a1P39061 Gm28693-202ENSMUST00000190758 331 ntBASIC18.39■□□□□ 0.53
Col18a1P39061 Gm37042-201ENSMUST00000193816 581 ntBASIC18.39■□□□□ 0.53
Col18a1P39061 AC173210.1-201ENSMUST00000222341 1131 ntBASIC18.39■□□□□ 0.53
Col18a1P39061 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col18a1P39061 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms