Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Sdc1P18828 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC11.62□□□□□ -0.55
Sdc1P18828 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC11.62□□□□□ -0.55
Sdc1P18828 AC153794.1-201ENSMUST00000169148 126 ntBASIC11.62□□□□□ -0.55
Sdc1P18828 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Gm18959-201ENSMUST00000208954 655 ntBASIC11.62□□□□□ -0.55
Sdc1P18828 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Sdc1P18828 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Sdc1P18828 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Gm10729-202ENSMUST00000193403 1375 ntBASIC11.62□□□□□ -0.55
Sdc1P18828 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
Sdc1P18828 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Sdc1P18828 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sdc1P18828 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Sdc1P18828 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC11.61□□□□□ -0.55
Sdc1P18828 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Gm6623-201ENSMUST00000173570 544 ntBASIC11.61□□□□□ -0.55
Sdc1P18828 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC11.61□□□□□ -0.55
Sdc1P18828 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC11.61□□□□□ -0.55
Sdc1P18828 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC11.61□□□□□ -0.55
Sdc1P18828 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC11.61□□□□□ -0.55
Sdc1P18828 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Sdc1P18828 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC11.61□□□□□ -0.55
Sdc1P18828 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC11.61□□□□□ -0.55
Sdc1P18828 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Sdc1P18828 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sdc1P18828 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Sdc1P18828 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC11.6□□□□□ -0.55
Sdc1P18828 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC11.6□□□□□ -0.55
Sdc1P18828 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Sdc1P18828 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC11.6□□□□□ -0.55
Sdc1P18828 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Gm13168-201ENSMUST00000121771 632 ntBASIC11.6□□□□□ -0.55
Sdc1P18828 Gm12497-201ENSMUST00000138778 237 ntBASIC11.6□□□□□ -0.55
Sdc1P18828 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC11.6□□□□□ -0.55
Sdc1P18828 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC11.6□□□□□ -0.55
Sdc1P18828 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC11.6□□□□□ -0.55
Sdc1P18828 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Sdc1P18828 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sdc1P18828 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC11.6□□□□□ -0.55
Sdc1P18828 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms