Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
RaraP11416 Il17rd-203ENSMUST00000225146 3366 ntBASIC15.35■□□□□ 0.05
RaraP11416 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RaraP11416 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RaraP11416 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC15.34■□□□□ 0.05
RaraP11416 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Gm12882-201ENSMUST00000121696 517 ntBASIC15.34■□□□□ 0.05
RaraP11416 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC15.34■□□□□ 0.05
RaraP11416 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
RaraP11416 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC15.34■□□□□ 0.05
RaraP11416 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC15.34■□□□□ 0.05
RaraP11416 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
RaraP11416 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RaraP11416 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RaraP11416 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
RaraP11416 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
RaraP11416 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RaraP11416 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC15.33■□□□□ 0.05
RaraP11416 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC15.33■□□□□ 0.05
RaraP11416 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RaraP11416 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
RaraP11416 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Gm11025-201ENSMUST00000140773 466 ntBASIC15.33■□□□□ 0.04
RaraP11416 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.33■□□□□ 0.04
RaraP11416 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC15.33■□□□□ 0.04
RaraP11416 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RaraP11416 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC15.33■□□□□ 0.04
RaraP11416 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
RaraP11416 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
RaraP11416 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC15.33■□□□□ 0.04
RaraP11416 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RaraP11416 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC15.32■□□□□ 0.04
RaraP11416 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RaraP11416 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RaraP11416 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
RaraP11416 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC15.32■□□□□ 0.04
RaraP11416 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC15.32■□□□□ 0.04
RaraP11416 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC15.32■□□□□ 0.04
RaraP11416 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC15.32■□□□□ 0.04
RaraP11416 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Gm42934-201ENSMUST00000196920 1345 ntBASIC15.32■□□□□ 0.04
RaraP11416 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC15.32■□□□□ 0.04
RaraP11416 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RaraP11416 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC15.31■□□□□ 0.04
RaraP11416 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RaraP11416 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
RaraP11416 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
RaraP11416 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RaraP11416 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
RaraP11416 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC15.31■□□□□ 0.04
RaraP11416 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC15.31■□□□□ 0.04
RaraP11416 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms