Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Il17rd-203ENSMUST00000225146 3366 ntBASIC11.75□□□□□ -0.53
Hmgb3O54879 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC11.75□□□□□ -0.53
Hmgb3O54879 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hmgb3O54879 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC11.74□□□□□ -0.53
Hmgb3O54879 AC126250.1-201ENSMUST00000228343 1768 ntBASIC11.74□□□□□ -0.53
Hmgb3O54879 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Mecomos-201ENSMUST00000125611 5510 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Hmgb3O54879 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC11.74□□□□□ -0.53
Hmgb3O54879 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Gm42769-201ENSMUST00000198576 1659 ntBASIC11.74□□□□□ -0.53
Hmgb3O54879 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Hhip-201ENSMUST00000079038 9074 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Gm12500-202ENSMUST00000186471 2428 ntBASIC11.74□□□□□ -0.53
Hmgb3O54879 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hmgb3O54879 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
Hmgb3O54879 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Hmgb3O54879 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC11.73□□□□□ -0.53
Hmgb3O54879 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC11.73□□□□□ -0.53
Hmgb3O54879 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC11.73□□□□□ -0.53
Hmgb3O54879 Gm27742-201ENSMUST00000184667 60 ntBASIC11.73□□□□□ -0.53
Hmgb3O54879 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Gm2420-202ENSMUST00000202224 2249 ntBASIC11.73□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms