Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Nr1i3O35627 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nr1i3O35627 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nr1i3O35627 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nr1i3O35627 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nr1i3O35627 Gm38391-201ENSMUST00000191720 4069 ntBASIC15.25■□□□□ 0.03
Nr1i3O35627 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nr1i3O35627 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nr1i3O35627 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Nr1i3O35627 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nr1i3O35627 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Nr1i3O35627 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC15.24■□□□□ 0.03
Nr1i3O35627 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC15.24■□□□□ 0.03
Nr1i3O35627 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Nr1i3O35627 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Nr1i3O35627 Ighv8-14-201ENSMUST00000196781 358 ntBASIC15.24■□□□□ 0.03
Nr1i3O35627 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC15.24■□□□□ 0.03
Nr1i3O35627 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Nr1i3O35627 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Nr1i3O35627 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nr1i3O35627 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Nr1i3O35627 Gm18244-201ENSMUST00000219747 1566 ntBASIC15.24■□□□□ 0.03
Nr1i3O35627 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Nr1i3O35627 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC15.23■□□□□ 0.03
Nr1i3O35627 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC15.23■□□□□ 0.03
Nr1i3O35627 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC15.23■□□□□ 0.03
Nr1i3O35627 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Gm2420-202ENSMUST00000202224 2249 ntBASIC15.23■□□□□ 0.03
Nr1i3O35627 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nr1i3O35627 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Nr1i3O35627 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Nr1i3O35627 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC15.22■□□□□ 0.03
Nr1i3O35627 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
Nr1i3O35627 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC15.22■□□□□ 0.03
Nr1i3O35627 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC15.22■□□□□ 0.03
Nr1i3O35627 CT025610.1-201ENSMUST00000224552 1786 ntBASIC15.22■□□□□ 0.03
Nr1i3O35627 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.22■□□□□ 0.03
Nr1i3O35627 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC15.22■□□□□ 0.03
Nr1i3O35627 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.22■□□□□ 0.03
Nr1i3O35627 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 1818.2 ms