Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Chd3B1AR17 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC13.88□□□□□ -0.19
Chd3B1AR17 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC13.88□□□□□ -0.19
Chd3B1AR17 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Chd3B1AR17 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC13.88□□□□□ -0.19
Chd3B1AR17 Gm4971-201ENSMUST00000205991 1108 ntBASIC13.88□□□□□ -0.19
Chd3B1AR17 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
Chd3B1AR17 Gm15222-202ENSMUST00000228667 1726 ntBASIC13.88□□□□□ -0.19
Chd3B1AR17 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Chd3B1AR17 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC13.88□□□□□ -0.19
Chd3B1AR17 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Gm14127-201ENSMUST00000117906 678 ntBASIC13.87□□□□□ -0.19
Chd3B1AR17 Gm15460-201ENSMUST00000118147 391 ntBASIC13.87□□□□□ -0.19
Chd3B1AR17 Gm12138-201ENSMUST00000122180 951 ntBASIC13.87□□□□□ -0.19
Chd3B1AR17 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC13.87□□□□□ -0.19
Chd3B1AR17 Gm18018-201ENSMUST00000198273 408 ntBASIC13.87□□□□□ -0.19
Chd3B1AR17 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC13.87□□□□□ -0.19
Chd3B1AR17 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
Chd3B1AR17 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Gm45630-201ENSMUST00000210243 1911 ntBASIC13.87□□□□□ -0.19
Chd3B1AR17 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Chd3B1AR17 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Chd3B1AR17 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Chd3B1AR17 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Mir6392-201ENSMUST00000184924 108 ntBASIC13.87□□□□□ -0.19
Chd3B1AR17 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Chd3B1AR17 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Chd3B1AR17 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Chd3B1AR17 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC13.86□□□□□ -0.19
Chd3B1AR17 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Gm17795-201ENSMUST00000214505 757 ntBASIC13.86□□□□□ -0.19
Chd3B1AR17 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Chd3B1AR17 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC13.86□□□□□ -0.19
Chd3B1AR17 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Chd3B1AR17 Mir1894-201ENSMUST00000122802 81 ntBASIC13.86□□□□□ -0.19
Chd3B1AR17 AC130829.1-201ENSMUST00000221548 494 ntBASIC13.86□□□□□ -0.19
Chd3B1AR17 AC154239.3-201ENSMUST00000226933 674 ntBASIC13.86□□□□□ -0.19
Chd3B1AR17 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Chd3B1AR17 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Chd3B1AR17 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms