Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Trim3Q9R1R2 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.27
Trim3Q9R1R2 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.27
Trim3Q9R1R2 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.39□□□□□ -0.27
Trim3Q9R1R2 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Gm8749-201ENSMUST00000117737 331 ntBASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 CT025626.1-201ENSMUST00000223735 1455 ntBASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC13.39□□□□□ -0.27
Trim3Q9R1R2 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Gm44645-201ENSMUST00000205492 1653 ntBASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Gm4691-201ENSMUST00000182339 1000 ntBASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Gm2451-201ENSMUST00000199447 999 ntBASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Gm10290-201ENSMUST00000200451 999 ntBASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC13.38□□□□□ -0.27
Trim3Q9R1R2 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Trim3Q9R1R2 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trim3Q9R1R2 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Trim3Q9R1R2 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms