Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Mir7085-201ENSMUST00000184353 66 ntBASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 AC192088.1-201ENSMUST00000227561 301 ntBASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Gm14730-201ENSMUST00000122378 1045 ntBASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Gm8602-201ENSMUST00000184045 607 ntBASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Gm7498-201ENSMUST00000203282 1084 ntBASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 AC156560.2-201ENSMUST00000221232 264 ntBASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf1Q9EPU4 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.39■□□□□ 0.7
Cpsf1Q9EPU4 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Gm8337-201ENSMUST00000187358 1938 ntBASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Gm14127-201ENSMUST00000117906 678 ntBASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Gm12485-201ENSMUST00000119641 291 ntBASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf1Q9EPU4 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Cpsf1Q9EPU4 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cpsf1Q9EPU4 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Cpsf1Q9EPU4 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cpsf1Q9EPU4 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cpsf1Q9EPU4 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cpsf1Q9EPU4 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC19.37■□□□□ 0.69
Cpsf1Q9EPU4 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cpsf1Q9EPU4 Gm13829-201ENSMUST00000119600 138 ntBASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms