Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc9Q8VC31 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc9Q8VC31 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc9Q8VC31 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.12■□□□□ 0.33
Ccdc9Q8VC31 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc9Q8VC31 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc9Q8VC31 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
Ccdc9Q8VC31 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc9Q8VC31 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc9Q8VC31 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC17.11■□□□□ 0.33
Ccdc9Q8VC31 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc9Q8VC31 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Gm45011-201ENSMUST00000207620 2297 ntBASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Gm23634-201ENSMUST00000175071 91 ntBASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Zfp125-201ENSMUST00000079237 2488 ntBASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Ccdc9Q8VC31 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Ccdc9Q8VC31 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
Ccdc9Q8VC31 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc9Q8VC31 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc9Q8VC31 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Ccdc9Q8VC31 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc9Q8VC31 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc9Q8VC31 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc9Q8VC31 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms