Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Mmp14-206ENSMUST00000225641 3238 ntBASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Gm7229-201ENSMUST00000214719 1007 ntBASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col28a1Q2UY11 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Gm15920-201ENSMUST00000118998 402 ntBASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Gm37153-201ENSMUST00000193637 231 ntBASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Gm44945-201ENSMUST00000206764 1187 ntBASIC13.81□□□□□ -0.2
Col28a1Q2UY11 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col28a1Q2UY11 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Acot6-202ENSMUST00000222921 3622 ntBASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC13.8□□□□□ -0.2
Col28a1Q2UY11 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 AC131709.1-201ENSMUST00000224731 1180 ntBASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Gm38102-201ENSMUST00000192791 1935 ntBASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col28a1Q2UY11 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms