Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Gm18222-201ENSMUST00000202416 1387 ntBASIC12.11□□□□□ -0.47
Col8a1Q00780 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Snora78-201ENSMUST00000158630 128 ntBASIC12.11□□□□□ -0.47
Col8a1Q00780 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.11□□□□□ -0.47
Col8a1Q00780 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Gm7558-201ENSMUST00000193221 1165 ntBASIC12.11□□□□□ -0.47
Col8a1Q00780 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Gm17794-201ENSMUST00000220252 955 ntBASIC12.11□□□□□ -0.47
Col8a1Q00780 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Col8a1Q00780 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Gm5912-201ENSMUST00000122282 1438 ntBASIC12.11□□□□□ -0.47
Col8a1Q00780 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
Col8a1Q00780 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.1□□□□□ -0.47
Col8a1Q00780 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Col8a1Q00780 Gm27528-202ENSMUST00000222916 2012 ntBASIC12.1□□□□□ -0.47
Col8a1Q00780 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC12.1□□□□□ -0.47
Col8a1Q00780 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Gm12585-201ENSMUST00000117307 290 ntBASIC12.1□□□□□ -0.47
Col8a1Q00780 Gm15393-201ENSMUST00000120499 219 ntBASIC12.1□□□□□ -0.47
Col8a1Q00780 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.1□□□□□ -0.47
Col8a1Q00780 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
Col8a1Q00780 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.1□□□□□ -0.47
Col8a1Q00780 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Col8a1Q00780 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Col8a1Q00780 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col8a1Q00780 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Col8a1Q00780 Tfap2a-203ENSMUST00000223869 2037 ntBASIC12.1□□□□□ -0.47
Col8a1Q00780 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC12.09□□□□□ -0.47
Col8a1Q00780 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC12.09□□□□□ -0.47
Col8a1Q00780 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 AC163637.1-201ENSMUST00000215491 1894 ntBASIC12.09□□□□□ -0.47
Col8a1Q00780 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Gm27486-201ENSMUST00000184923 80 ntBASIC12.09□□□□□ -0.47
Col8a1Q00780 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC12.09□□□□□ -0.47
Col8a1Q00780 Gm33320-201ENSMUST00000192232 530 ntBASIC12.09□□□□□ -0.47
Col8a1Q00780 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.09□□□□□ -0.47
Col8a1Q00780 Gm7172-201ENSMUST00000218047 1152 ntBASIC12.09□□□□□ -0.47
Col8a1Q00780 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col8a1Q00780 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms