Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.28□□□□□ -0.44
Nkx3-1P97436 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Gm25857-201ENSMUST00000082788 129 ntBASIC12.28□□□□□ -0.44
Nkx3-1P97436 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx3-1P97436 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Ldha-ps-201ENSMUST00000119390 995 ntBASIC12.27□□□□□ -0.45
Nkx3-1P97436 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Gm8602-201ENSMUST00000184045 607 ntBASIC12.27□□□□□ -0.45
Nkx3-1P97436 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.27□□□□□ -0.45
Nkx3-1P97436 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC12.27□□□□□ -0.45
Nkx3-1P97436 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.27□□□□□ -0.45
Nkx3-1P97436 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Gm37912-201ENSMUST00000191895 3076 ntBASIC12.27□□□□□ -0.45
Nkx3-1P97436 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Gm37305-201ENSMUST00000195714 4279 ntBASIC12.27□□□□□ -0.45
Nkx3-1P97436 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx3-1P97436 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 AC166574.6-201ENSMUST00000227889 1806 ntBASIC12.26□□□□□ -0.45
Nkx3-1P97436 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Gm37748-201ENSMUST00000194379 1140 ntBASIC12.26□□□□□ -0.45
Nkx3-1P97436 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 AC139580.1-202ENSMUST00000223574 928 ntBASIC12.26□□□□□ -0.45
Nkx3-1P97436 AC149294.4-201ENSMUST00000227870 882 ntBASIC12.26□□□□□ -0.45
Nkx3-1P97436 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx3-1P97436 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms