Protein–RNA interactions for Protein: P62960

Ybx1, Nuclease-sensitive element-binding protein 1, mousemouse

Known RBP Predictions only

Length 322 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ybx1P62960 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ybx1P62960 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ybx1P62960 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ybx1P62960 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ybx1P62960 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ybx1P62960 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ybx1P62960 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ybx1P62960 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ybx1P62960 AC154527.2-201ENSMUST00000225256 1466 ntBASIC14.55□□□□□ -0.08
Ybx1P62960 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ybx1P62960 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Ybx1P62960 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Ybx1P62960 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ybx1P62960 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC14.54□□□□□ -0.08
Ybx1P62960 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC14.54□□□□□ -0.08
Ybx1P62960 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Ybx1P62960 Gm27701-201ENSMUST00000184498 110 ntBASIC14.54□□□□□ -0.08
Ybx1P62960 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Ybx1P62960 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC14.54□□□□□ -0.08
Ybx1P62960 Gm21470-201ENSMUST00000187680 696 ntBASIC14.54□□□□□ -0.08
Ybx1P62960 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Ybx1P62960 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ybx1P62960 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Ybx1P62960 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Ybx1P62960 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Ybx1P62960 Sorbs3-204ENSMUST00000227929 2460 ntBASIC14.53□□□□□ -0.08
Ybx1P62960 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Gm42690-201ENSMUST00000197921 1836 ntBASIC14.53□□□□□ -0.08
Ybx1P62960 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Ybx1P62960 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC14.53□□□□□ -0.08
Ybx1P62960 Gm15824-201ENSMUST00000119516 955 ntBASIC14.53□□□□□ -0.08
Ybx1P62960 Gm12882-201ENSMUST00000121696 517 ntBASIC14.53□□□□□ -0.08
Ybx1P62960 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC14.53□□□□□ -0.08
Ybx1P62960 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC14.53□□□□□ -0.08
Ybx1P62960 Gm5279-201ENSMUST00000199575 745 ntBASIC14.53□□□□□ -0.08
Ybx1P62960 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Carlr-201ENSMUST00000181515 2574 ntBASIC14.53□□□□□ -0.08
Ybx1P62960 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Ybx1P62960 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ybx1P62960 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ybx1P62960 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ybx1P62960 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ybx1P62960 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ybx1P62960 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ybx1P62960 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC14.52□□□□□ -0.08
Ybx1P62960 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ybx1P62960 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Ybx1P62960 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.52□□□□□ -0.08
Ybx1P62960 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Ybx1P62960 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ybx1P62960 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ybx1P62960 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ybx1P62960 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC14.52□□□□□ -0.09
Ybx1P62960 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ybx1P62960 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ybx1P62960 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ybx1P62960 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Ybx1P62960 Gm9002-201ENSMUST00000178437 499 ntBASIC14.52□□□□□ -0.09
Ybx1P62960 Mir7654-201ENSMUST00000185082 70 ntBASIC14.52□□□□□ -0.09
Ybx1P62960 Gm7558-201ENSMUST00000193221 1165 ntBASIC14.52□□□□□ -0.09
Ybx1P62960 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC14.52□□□□□ -0.09
Ybx1P62960 Gm17795-201ENSMUST00000214505 757 ntBASIC14.52□□□□□ -0.09
Ybx1P62960 AC150560.1-201ENSMUST00000227731 1187 ntBASIC14.52□□□□□ -0.09
Ybx1P62960 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ybx1P62960 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 69.6 ms