Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Rfx1P48377 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Rfx1P48377 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Rfx1P48377 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC16.99■□□□□ 0.31
Rfx1P48377 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Rfx1P48377 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Rfx1P48377 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC16.99■□□□□ 0.31
Rfx1P48377 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Rfx1P48377 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.99■□□□□ 0.31
Rfx1P48377 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC16.99■□□□□ 0.31
Rfx1P48377 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.99■□□□□ 0.31
Rfx1P48377 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC16.99■□□□□ 0.31
Rfx1P48377 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.99■□□□□ 0.31
Rfx1P48377 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.99■□□□□ 0.31
Rfx1P48377 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC16.99■□□□□ 0.31
Rfx1P48377 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Rfx1P48377 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Rfx1P48377 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Rfx1P48377 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Rfx1P48377 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.98■□□□□ 0.31
Rfx1P48377 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.98■□□□□ 0.31
Rfx1P48377 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC16.98■□□□□ 0.31
Rfx1P48377 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC16.98■□□□□ 0.31
Rfx1P48377 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC16.98■□□□□ 0.31
Rfx1P48377 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Umpk-ps-201ENSMUST00000211897 827 ntBASIC16.98■□□□□ 0.31
Rfx1P48377 Gm10060-201ENSMUST00000212002 111 ntBASIC16.98■□□□□ 0.31
Rfx1P48377 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Gm15590-201ENSMUST00000078419 552 ntBASIC16.98■□□□□ 0.31
Rfx1P48377 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.98■□□□□ 0.31
Rfx1P48377 Gm10154-201ENSMUST00000084445 354 ntBASIC16.98■□□□□ 0.31
Rfx1P48377 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Rfx1P48377 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC16.98■□□□□ 0.31
Rfx1P48377 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
Rfx1P48377 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC16.97■□□□□ 0.31
Rfx1P48377 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC16.97■□□□□ 0.31
Rfx1P48377 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Rfx1P48377 Gm16198-201ENSMUST00000118766 670 ntBASIC16.97■□□□□ 0.31
Rfx1P48377 Gm9103-201ENSMUST00000119371 405 ntBASIC16.97■□□□□ 0.31
Rfx1P48377 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
Rfx1P48377 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.97■□□□□ 0.31
Rfx1P48377 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC16.97■□□□□ 0.31
Rfx1P48377 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Rfx1P48377 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC16.97■□□□□ 0.31
Rfx1P48377 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.97■□□□□ 0.31
Rfx1P48377 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC16.97■□□□□ 0.31
Rfx1P48377 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Rfx1P48377 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms