Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Ap5m1-205ENSMUST00000227431 3757 ntBASIC13.53□□□□□ -0.24
Msx1P13297 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC13.53□□□□□ -0.24
Msx1P13297 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.24
Msx1P13297 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Msx1P13297 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Msx1P13297 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Msx1P13297 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
Msx1P13297 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Msx1P13297 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Msx1P13297 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.52□□□□□ -0.24
Msx1P13297 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Msx1P13297 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
Msx1P13297 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC13.52□□□□□ -0.25
Msx1P13297 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Gm4691-201ENSMUST00000182339 1000 ntBASIC13.52□□□□□ -0.25
Msx1P13297 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Ighv8-7-201ENSMUST00000194349 297 ntBASIC13.52□□□□□ -0.25
Msx1P13297 Gm36943-201ENSMUST00000194422 282 ntBASIC13.52□□□□□ -0.25
Msx1P13297 AL593843.1-201ENSMUST00000195891 145 ntBASIC13.52□□□□□ -0.25
Msx1P13297 Gm2451-201ENSMUST00000199447 999 ntBASIC13.52□□□□□ -0.25
Msx1P13297 Gm10290-201ENSMUST00000200451 999 ntBASIC13.52□□□□□ -0.25
Msx1P13297 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Msx1P13297 Trdn-202ENSMUST00000217779 1182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Gm25857-201ENSMUST00000082788 129 ntBASIC13.52□□□□□ -0.25
Msx1P13297 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC13.52□□□□□ -0.25
Msx1P13297 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC13.52□□□□□ -0.25
Msx1P13297 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
Msx1P13297 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Msx1P13297 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Msx1P13297 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Msx1P13297 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
Msx1P13297 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Msx1P13297 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 9030204H09Rik-201ENSMUST00000139455 653 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC13.51□□□□□ -0.25
Msx1P13297 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Gm6745-201ENSMUST00000199216 526 ntBASIC13.51□□□□□ -0.25
Msx1P13297 Olfr286-202ENSMUST00000205305 969 ntBASIC13.51□□□□□ -0.25
Msx1P13297 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Msx1P13297 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 AC162938.1-201ENSMUST00000213140 2323 ntBASIC13.51□□□□□ -0.25
Msx1P13297 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Msx1P13297 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC13.5□□□□□ -0.25
Msx1P13297 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC13.5□□□□□ -0.25
Msx1P13297 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC13.5□□□□□ -0.25
Msx1P13297 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Msx1P13297 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Msx1P13297 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Msx1P13297 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Gm42466-201ENSMUST00000202099 1301 ntBASIC13.5□□□□□ -0.25
Msx1P13297 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC13.5□□□□□ -0.25
Msx1P13297 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Gm6912-201ENSMUST00000117218 544 ntBASIC13.5□□□□□ -0.25
Msx1P13297 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC13.5□□□□□ -0.25
Msx1P13297 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC13.5□□□□□ -0.25
Msx1P13297 Klk2-ps-201ENSMUST00000205342 571 ntBASIC13.5□□□□□ -0.25
Msx1P13297 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 AC158529.1-201ENSMUST00000223618 239 ntBASIC13.5□□□□□ -0.25
Msx1P13297 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Msx1P13297 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms