Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Mir6982-201ENSMUST00000184354 68 ntBASIC11.78□□□□□ -0.52
Hmgb3O54879 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC11.78□□□□□ -0.52
Hmgb3O54879 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 AC164567.1-201ENSMUST00000219185 960 ntBASIC11.78□□□□□ -0.52
Hmgb3O54879 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Hmgb3O54879 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Hmgb3O54879 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Hmgb3O54879 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hmgb3O54879 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hmgb3O54879 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hmgb3O54879 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Hmgb3O54879 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Hmgb3O54879 Grk6-205ENSMUST00000224653 2976 ntBASIC11.77□□□□□ -0.52
Hmgb3O54879 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hmgb3O54879 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Hmgb3O54879 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC11.77□□□□□ -0.52
Hmgb3O54879 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Hmgb3O54879 Unc79-202ENSMUST00000101099 8874 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hmgb3O54879 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Hmgb3O54879 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Hmgb3O54879 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
Hmgb3O54879 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC11.77□□□□□ -0.53
Hmgb3O54879 Gm8097-201ENSMUST00000117903 829 ntBASIC11.77□□□□□ -0.53
Hmgb3O54879 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC11.77□□□□□ -0.53
Hmgb3O54879 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC11.77□□□□□ -0.53
Hmgb3O54879 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC11.77□□□□□ -0.53
Hmgb3O54879 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Hmgb3O54879 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.53
Hmgb3O54879 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC11.77□□□□□ -0.53
Hmgb3O54879 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hmgb3O54879 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Gm25016-201ENSMUST00000158399 131 ntBASIC11.76□□□□□ -0.53
Hmgb3O54879 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Cmtm5-203ENSMUST00000227441 610 ntBASIC11.76□□□□□ -0.53
Hmgb3O54879 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hmgb3O54879 Gm5837-201ENSMUST00000191844 1369 ntBASIC11.76□□□□□ -0.53
Hmgb3O54879 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Hmgb3O54879 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 74.1 ms