Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Gm9824-201ENSMUST00000178707 561 ntBASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Gm6888-201ENSMUST00000221983 706 ntBASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Hist1h2al-201ENSMUST00000091708 339 ntBASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
Ushbp1Q8R370 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Gm2810-201ENSMUST00000118681 990 ntBASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Gm13453-201ENSMUST00000118708 357 ntBASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Gm38225-201ENSMUST00000194001 393 ntBASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Gtpbp10-211ENSMUST00000198799 648 ntBASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 AC102291.3-201ENSMUST00000226566 405 ntBASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Ushbp1Q8R370 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC15.96■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms