Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 AA619741-201ENSMUST00000195095 646 ntBASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Dupd1-202ENSMUST00000224735 548 ntBASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Rbfox2-208ENSMUST00000227930 1218 ntBASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Mir125a-201ENSMUST00000083545 68 ntBASIC17.21■□□□□ 0.35
Brf1Q8CFK2 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC17.21■□□□□ 0.35
Brf1Q8CFK2 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Brf1Q8CFK2 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Brf1Q8CFK2 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.34
Brf1Q8CFK2 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Brf1Q8CFK2 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Gm24543-201ENSMUST00000103867 82 ntBASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 AC124732.2-201ENSMUST00000221977 316 ntBASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 AC167013.2-201ENSMUST00000228520 2684 ntBASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Brf1Q8CFK2 Gm38102-201ENSMUST00000192791 1935 ntBASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Gm15957-201ENSMUST00000118893 974 ntBASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Gm27622-201ENSMUST00000183779 60 ntBASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Gm27430-201ENSMUST00000184585 107 ntBASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Gm44333-201ENSMUST00000197168 107 ntBASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Gm9109-201ENSMUST00000120254 1405 ntBASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Brf1Q8CFK2 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 AC115735.4-201ENSMUST00000227460 1944 ntBASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms