Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm13385-201ENSMUST00000121089 220 ntBASIC20.02■□□□□ 0.8
Usp47Q8BY87 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp47Q8BY87 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp47Q8BY87 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp47Q8BY87 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp47Q8BY87 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp47Q8BY87 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Usp47Q8BY87 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Ldha-ps-201ENSMUST00000119390 995 ntBASIC20.01■□□□□ 0.79
Usp47Q8BY87 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC20.01■□□□□ 0.79
Usp47Q8BY87 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Ighv1-51-201ENSMUST00000192903 354 ntBASIC20.01■□□□□ 0.79
Usp47Q8BY87 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Usp47Q8BY87 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp47Q8BY87 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC20■□□□□ 0.79
Usp47Q8BY87 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC20■□□□□ 0.79
Usp47Q8BY87 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC20■□□□□ 0.79
Usp47Q8BY87 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC20■□□□□ 0.79
Usp47Q8BY87 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
Usp47Q8BY87 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Usp47Q8BY87 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC20■□□□□ 0.79
Usp47Q8BY87 Gm28631-201ENSMUST00000190740 334 ntBASIC20■□□□□ 0.79
Usp47Q8BY87 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC20■□□□□ 0.79
Usp47Q8BY87 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC20■□□□□ 0.79
Usp47Q8BY87 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp47Q8BY87 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Gm6912-201ENSMUST00000117218 544 ntBASIC19.99■□□□□ 0.79
Usp47Q8BY87 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Gm17795-201ENSMUST00000214505 757 ntBASIC19.99■□□□□ 0.79
Usp47Q8BY87 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp47Q8BY87 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp47Q8BY87 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp47Q8BY87 Gm5279-201ENSMUST00000199575 745 ntBASIC19.98■□□□□ 0.79
Usp47Q8BY87 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Usp47Q8BY87 Gm18624-201ENSMUST00000220966 658 ntBASIC19.98■□□□□ 0.79
Usp47Q8BY87 Arhgef33-209ENSMUST00000225223 714 ntBASIC19.98■□□□□ 0.79
Usp47Q8BY87 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp47Q8BY87 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp47Q8BY87 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp47Q8BY87 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Usp47Q8BY87 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms