Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps54Q5SPW0 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps54Q5SPW0 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps54Q5SPW0 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps54Q5SPW0 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps54Q5SPW0 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps54Q5SPW0 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps54Q5SPW0 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps54Q5SPW0 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps54Q5SPW0 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Vps54Q5SPW0 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Vps54Q5SPW0 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Vps54Q5SPW0 AC121801.1-201ENSMUST00000225363 1899 ntBASIC17.08■□□□□ 0.33
Vps54Q5SPW0 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Vps54Q5SPW0 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Gm7820-201ENSMUST00000121012 1052 ntBASIC17.08■□□□□ 0.32
Vps54Q5SPW0 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 AC132863.2-201ENSMUST00000226643 799 ntBASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC17.08■□□□□ 0.32
Vps54Q5SPW0 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Gm15460-201ENSMUST00000118147 391 ntBASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Gm29667-201ENSMUST00000190817 490 ntBASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 AC238811.1-201ENSMUST00000225302 441 ntBASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps54Q5SPW0 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Gm7390-201ENSMUST00000212452 1216 ntBASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Gm45605-201ENSMUST00000210265 4269 ntBASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps54Q5SPW0 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms