Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Gm11543-201ENSMUST00000120758 370 ntBASIC16.79■□□□□ 0.28
Limch1Q3UH68 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Gm37277-201ENSMUST00000194052 1111 ntBASIC16.79■□□□□ 0.28
Limch1Q3UH68 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC16.79■□□□□ 0.28
Limch1Q3UH68 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
Limch1Q3UH68 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Limch1Q3UH68 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Limch1Q3UH68 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Limch1Q3UH68 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Limch1Q3UH68 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Limch1Q3UH68 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC16.77■□□□□ 0.28
Limch1Q3UH68 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Limch1Q3UH68 Gm27618-201ENSMUST00000183671 60 ntBASIC16.77■□□□□ 0.28
Limch1Q3UH68 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Limch1Q3UH68 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Limch1Q3UH68 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC16.77■□□□□ 0.28
Limch1Q3UH68 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC16.77■□□□□ 0.28
Limch1Q3UH68 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Limch1Q3UH68 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Limch1Q3UH68 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Limch1Q3UH68 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Limch1Q3UH68 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Limch1Q3UH68 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Limch1Q3UH68 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Limch1Q3UH68 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Limch1Q3UH68 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Limch1Q3UH68 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Limch1Q3UH68 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Gm6415-201ENSMUST00000118488 348 ntBASIC16.76■□□□□ 0.27
Limch1Q3UH68 Gm13223-201ENSMUST00000118609 747 ntBASIC16.76■□□□□ 0.27
Limch1Q3UH68 Gm9824-201ENSMUST00000178707 561 ntBASIC16.76■□□□□ 0.27
Limch1Q3UH68 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Arhgef33-209ENSMUST00000225223 714 ntBASIC16.76■□□□□ 0.27
Limch1Q3UH68 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.76■□□□□ 0.27
Limch1Q3UH68 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Limch1Q3UH68 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Limch1Q3UH68 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms