Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gm18244-201ENSMUST00000219747 1566 ntBASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gm5682-201ENSMUST00000173402 505 ntBASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Chchd1-203ENSMUST00000224633 557 ntBASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 CT025610.1-201ENSMUST00000224552 1786 ntBASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gm11873-201ENSMUST00000117877 1304 ntBASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 AC130669.1-201ENSMUST00000228537 1672 ntBASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Gm6198-201ENSMUST00000191337 2929 ntBASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Gm13464-201ENSMUST00000119418 935 ntBASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Gm15593-201ENSMUST00000122085 1008 ntBASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Gm5253-201ENSMUST00000187104 1025 ntBASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Gm9682-201ENSMUST00000197505 556 ntBASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Gm37411-201ENSMUST00000194180 2282 ntBASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col28a1Q2UY11 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.19
Col28a1Q2UY11 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Col28a1Q2UY11 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
Col28a1Q2UY11 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Gm11764-201ENSMUST00000120221 623 ntBASIC13.83□□□□□ -0.2
Col28a1Q2UY11 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Gm15500-202ENSMUST00000071641 1019 ntBASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col28a1Q2UY11 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms