Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
Col17a1Q07563 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Col17a1Q07563 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC21.43■■□□□ 1.02
Col17a1Q07563 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC21.43■■□□□ 1.02
Col17a1Q07563 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Gm7207-201ENSMUST00000211575 1067 ntBASIC21.43■■□□□ 1.02
Col17a1Q07563 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Col17a1Q07563 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Col17a1Q07563 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col17a1Q07563 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Col17a1Q07563 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col17a1Q07563 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Col17a1Q07563 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Col17a1Q07563 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
Col17a1Q07563 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col17a1Q07563 Gm13888-201ENSMUST00000119148 422 ntBASIC21.42■■□□□ 1.02
Col17a1Q07563 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC21.42■■□□□ 1.02
Col17a1Q07563 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Col17a1Q07563 Gm25700-201ENSMUST00000177693 110 ntBASIC21.42■■□□□ 1.02
Col17a1Q07563 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC21.42■■□□□ 1.02
Col17a1Q07563 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
Col17a1Q07563 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC21.42■■□□□ 1.02
Col17a1Q07563 AC159819.2-201ENSMUST00000216151 342 ntBASIC21.42■■□□□ 1.02
Col17a1Q07563 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC21.42■■□□□ 1.02
Col17a1Q07563 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col17a1Q07563 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC21.42■■□□□ 1.02
Col17a1Q07563 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Col17a1Q07563 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Col17a1Q07563 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Col17a1Q07563 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC21.41■■□□□ 1.02
Col17a1Q07563 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Col17a1Q07563 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Gm11531-201ENSMUST00000117614 555 ntBASIC21.41■■□□□ 1.02
Col17a1Q07563 Gm12363-201ENSMUST00000122250 668 ntBASIC21.41■■□□□ 1.02
Col17a1Q07563 Gm2231-201ENSMUST00000125661 612 ntBASIC21.41■■□□□ 1.02
Col17a1Q07563 Gm18734-201ENSMUST00000172937 808 ntBASIC21.41■■□□□ 1.02
Col17a1Q07563 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Col17a1Q07563 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Col17a1Q07563 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Col17a1Q07563 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Col17a1Q07563 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col17a1Q07563 AC167669.2-201ENSMUST00000224417 1620 ntBASIC21.4■■□□□ 1.02
Col17a1Q07563 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC21.4■■□□□ 1.02
Col17a1Q07563 Gm11930-201ENSMUST00000117788 190 ntBASIC21.4■■□□□ 1.02
Col17a1Q07563 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC21.4■■□□□ 1.02
Col17a1Q07563 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Col17a1Q07563 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC21.4■■□□□ 1.02
Col17a1Q07563 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC21.4■■□□□ 1.02
Col17a1Q07563 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC21.4■■□□□ 1.02
Col17a1Q07563 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Col17a1Q07563 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC21.4■■□□□ 1.02
Col17a1Q07563 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col17a1Q07563 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Col17a1Q07563 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col17a1Q07563 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
Col17a1Q07563 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Col17a1Q07563 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col17a1Q07563 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Col17a1Q07563 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col17a1Q07563 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC21.39■■□□□ 1.02
Col17a1Q07563 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC21.39■■□□□ 1.02
Col17a1Q07563 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col17a1Q07563 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col17a1Q07563 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col17a1Q07563 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col17a1Q07563 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 82 ms