Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Col8a1Q00780 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC12.14□□□□□ -0.47
Col8a1Q00780 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Col8a1Q00780 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 App-207ENSMUST00000227737 2827 ntBASIC12.14□□□□□ -0.47
Col8a1Q00780 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Col8a1Q00780 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Mir3547-201ENSMUST00000175461 88 ntBASIC12.13□□□□□ -0.47
Col8a1Q00780 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Gm27731-201ENSMUST00000185192 107 ntBASIC12.13□□□□□ -0.47
Col8a1Q00780 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
Col8a1Q00780 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC12.13□□□□□ -0.47
Col8a1Q00780 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col8a1Q00780 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
Col8a1Q00780 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Col8a1Q00780 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Col8a1Q00780 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC12.12□□□□□ -0.47
Col8a1Q00780 Gm14660-201ENSMUST00000119809 575 ntBASIC12.12□□□□□ -0.47
Col8a1Q00780 Mir1894-201ENSMUST00000122802 81 ntBASIC12.12□□□□□ -0.47
Col8a1Q00780 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC12.12□□□□□ -0.47
Col8a1Q00780 Gm38230-201ENSMUST00000193572 1159 ntBASIC12.12□□□□□ -0.47
Col8a1Q00780 Gm18307-201ENSMUST00000206864 949 ntBASIC12.12□□□□□ -0.47
Col8a1Q00780 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Col8a1Q00780 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Gm42901-201ENSMUST00000197735 3171 ntBASIC12.12□□□□□ -0.47
Col8a1Q00780 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Col8a1Q00780 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Col8a1Q00780 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Col8a1Q00780 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col8a1Q00780 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC12.11□□□□□ -0.47
Col8a1Q00780 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col8a1Q00780 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms