Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Gm11918-201ENSMUST00000121660 179 ntBASIC12.3□□□□□ -0.44
Nkx3-1P97436 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC12.3□□□□□ -0.44
Nkx3-1P97436 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC12.3□□□□□ -0.44
Nkx3-1P97436 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Nkx3-1P97436 AC155286.1-201ENSMUST00000218632 448 ntBASIC12.3□□□□□ -0.44
Nkx3-1P97436 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Nkx3-1P97436 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Gm19220-201ENSMUST00000222682 803 ntBASIC12.3□□□□□ -0.44
Nkx3-1P97436 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Nkx3-1P97436 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.28□□□□□ -0.44
Nkx3-1P97436 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx3-1P97436 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms