Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Carlr-201ENSMUST00000181515 2574 ntBASIC18.51■□□□□ 0.55
Col18a1P39061 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col18a1P39061 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col18a1P39061 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col18a1P39061 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col18a1P39061 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col18a1P39061 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.5■□□□□ 0.55
Col18a1P39061 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Col18a1P39061 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Gm14726-201ENSMUST00000120623 896 ntBASIC18.5■□□□□ 0.55
Col18a1P39061 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC18.5■□□□□ 0.55
Col18a1P39061 Gm5896-201ENSMUST00000189662 1024 ntBASIC18.5■□□□□ 0.55
Col18a1P39061 AC154680.1-201ENSMUST00000224376 859 ntBASIC18.5■□□□□ 0.55
Col18a1P39061 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Col18a1P39061 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC18.5■□□□□ 0.55
Col18a1P39061 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Col18a1P39061 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
Col18a1P39061 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC18.5■□□□□ 0.55
Col18a1P39061 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Gm13316-201ENSMUST00000140537 691 ntBASIC18.5■□□□□ 0.55
Col18a1P39061 Gm13570-201ENSMUST00000140763 309 ntBASIC18.5■□□□□ 0.55
Col18a1P39061 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC18.5■□□□□ 0.55
Col18a1P39061 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col18a1P39061 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Col18a1P39061 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Col18a1P39061 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC18.49■□□□□ 0.55
Col18a1P39061 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.49■□□□□ 0.55
Col18a1P39061 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC18.49■□□□□ 0.55
Col18a1P39061 Gm2231-201ENSMUST00000125661 612 ntBASIC18.49■□□□□ 0.55
Col18a1P39061 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
Col18a1P39061 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC18.49■□□□□ 0.55
Col18a1P39061 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC18.49■□□□□ 0.55
Col18a1P39061 AA914427-201ENSMUST00000193194 1166 ntBASIC18.49■□□□□ 0.55
Col18a1P39061 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC18.49■□□□□ 0.55
Col18a1P39061 AC153974.2-201ENSMUST00000218577 1025 ntBASIC18.49■□□□□ 0.55
Col18a1P39061 Gm18556-201ENSMUST00000219748 1031 ntBASIC18.49■□□□□ 0.55
Col18a1P39061 Gm18615-201ENSMUST00000222919 1031 ntBASIC18.49■□□□□ 0.55
Col18a1P39061 AC126253.1-202ENSMUST00000226732 835 ntBASIC18.49■□□□□ 0.55
Col18a1P39061 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Col18a1P39061 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.49■□□□□ 0.55
Col18a1P39061 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col18a1P39061 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC18.49■□□□□ 0.55
Col18a1P39061 Gm45244-201ENSMUST00000211328 2200 ntBASIC18.49■□□□□ 0.55
Col18a1P39061 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC18.48■□□□□ 0.55
Col18a1P39061 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC18.48■□□□□ 0.55
Col18a1P39061 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC18.48■□□□□ 0.55
Col18a1P39061 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC18.48■□□□□ 0.55
Col18a1P39061 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC18.48■□□□□ 0.55
Col18a1P39061 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC18.48■□□□□ 0.55
Col18a1P39061 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Zkscan14-203ENSMUST00000198959 2243 ntBASIC18.48■□□□□ 0.55
Col18a1P39061 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col18a1P39061 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
Col18a1P39061 Gm13665-201ENSMUST00000120830 528 ntBASIC18.47■□□□□ 0.55
Col18a1P39061 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC18.47■□□□□ 0.55
Col18a1P39061 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC18.47■□□□□ 0.55
Col18a1P39061 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col18a1P39061 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Col18a1P39061 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC18.47■□□□□ 0.55
Col18a1P39061 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC18.47■□□□□ 0.55
Col18a1P39061 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col18a1P39061 AC123857.2-201ENSMUST00000225756 1582 ntBASIC18.47■□□□□ 0.55
Col18a1P39061 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col18a1P39061 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col18a1P39061 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col18a1P39061 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms