Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC16.48■□□□□ 0.23
Col1a1P11087 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Col1a1P11087 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Col1a1P11087 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
Col1a1P11087 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.47■□□□□ 0.23
Col1a1P11087 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC16.47■□□□□ 0.23
Col1a1P11087 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Ssr1-204ENSMUST00000225319 1610 ntBASIC16.47■□□□□ 0.23
Col1a1P11087 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC16.47■□□□□ 0.23
Col1a1P11087 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC16.47■□□□□ 0.23
Col1a1P11087 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC16.47■□□□□ 0.23
Col1a1P11087 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Gm19309-201ENSMUST00000218295 205 ntBASIC16.47■□□□□ 0.23
Col1a1P11087 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Gm5161-201ENSMUST00000075243 853 ntBASIC16.47■□□□□ 0.23
Col1a1P11087 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Col1a1P11087 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col1a1P11087 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
Col1a1P11087 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Col1a1P11087 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Col1a1P11087 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC16.46■□□□□ 0.23
Col1a1P11087 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Gm22018-201ENSMUST00000104357 131 ntBASIC16.46■□□□□ 0.23
Col1a1P11087 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Gm12203-201ENSMUST00000118235 598 ntBASIC16.46■□□□□ 0.23
Col1a1P11087 Gm5687-201ENSMUST00000118252 640 ntBASIC16.46■□□□□ 0.23
Col1a1P11087 Gm12209-201ENSMUST00000120089 596 ntBASIC16.46■□□□□ 0.23
Col1a1P11087 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC16.46■□□□□ 0.23
Col1a1P11087 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC16.46■□□□□ 0.23
Col1a1P11087 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Col1a1P11087 Gm45880-201ENSMUST00000213041 853 ntBASIC16.46■□□□□ 0.23
Col1a1P11087 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC16.46■□□□□ 0.23
Col1a1P11087 AC155237.1-201ENSMUST00000226196 1279 ntBASIC16.46■□□□□ 0.23
Col1a1P11087 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col1a1P11087 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Col1a1P11087 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC16.46■□□□□ 0.22
Col1a1P11087 Gm10339-203ENSMUST00000225409 1671 ntBASIC16.46■□□□□ 0.22
Col1a1P11087 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col1a1P11087 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col1a1P11087 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Col1a1P11087 Gm27682-201ENSMUST00000183930 110 ntBASIC16.45■□□□□ 0.22
Col1a1P11087 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC16.45■□□□□ 0.22
Col1a1P11087 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col1a1P11087 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms