Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Madd-206ENSMUST00000099725 5905 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC11.8□□□□□ -0.52
Hmgb3O54879 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Hmgb3O54879 Gm5639-201ENSMUST00000122305 2403 ntBASIC11.8□□□□□ -0.52
Hmgb3O54879 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Dgkh-202ENSMUST00000226342 15261 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Hmgb3O54879 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Hmgb3O54879 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC11.8□□□□□ -0.52
Hmgb3O54879 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Hmgb3O54879 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Gm8655-201ENSMUST00000221159 852 ntBASIC11.8□□□□□ -0.52
Hmgb3O54879 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC11.8□□□□□ -0.52
Hmgb3O54879 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hmgb3O54879 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC11.8□□□□□ -0.52
Hmgb3O54879 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC11.79□□□□□ -0.52
Hmgb3O54879 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC11.79□□□□□ -0.52
Hmgb3O54879 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Gm44065-201ENSMUST00000203184 3527 ntBASIC11.79□□□□□ -0.52
Hmgb3O54879 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Hmgb3O54879 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC11.79□□□□□ -0.52
Hmgb3O54879 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC11.79□□□□□ -0.52
Hmgb3O54879 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC11.79□□□□□ -0.52
Hmgb3O54879 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC11.79□□□□□ -0.52
Hmgb3O54879 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
Hmgb3O54879 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Abca2-201ENSMUST00000102919 8033 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC11.79□□□□□ -0.52
Hmgb3O54879 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hmgb3O54879 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Hmgb3O54879 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Hmgb3O54879 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hmgb3O54879 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 79.9 ms