Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 AC117245.4-201ENSMUST00000217388 1646 ntBASIC26.73■■□□□ 1.87
Scn11aQ9R053 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Scn11aQ9R053 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
Scn11aQ9R053 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Scn11aQ9R053 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
Scn11aQ9R053 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Scn11aQ9R053 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC26.72■■□□□ 1.87
Scn11aQ9R053 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Scn11aQ9R053 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
Scn11aQ9R053 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Scn11aQ9R053 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Scn11aQ9R053 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Scn11aQ9R053 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
Scn11aQ9R053 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
Scn11aQ9R053 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Scn11aQ9R053 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Scn11aQ9R053 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Scn11aQ9R053 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Scn11aQ9R053 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
Scn11aQ9R053 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Scn11aQ9R053 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Scn11aQ9R053 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Scn11aQ9R053 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Scn11aQ9R053 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Scn11aQ9R053 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
Scn11aQ9R053 AC153524.1-201ENSMUST00000220436 1935 ntBASIC26.69■■□□□ 1.86
Scn11aQ9R053 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Scn11aQ9R053 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Scn11aQ9R053 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Scn11aQ9R053 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
Scn11aQ9R053 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Scn11aQ9R053 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Scn11aQ9R053 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
Scn11aQ9R053 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Scn11aQ9R053 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Scn11aQ9R053 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Scn11aQ9R053 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Scn11aQ9R053 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC26.66■■□□□ 1.86
Scn11aQ9R053 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC26.66■■□□□ 1.86
Scn11aQ9R053 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
Scn11aQ9R053 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Scn11aQ9R053 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Scn11aQ9R053 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Scn11aQ9R053 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
Scn11aQ9R053 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Scn11aQ9R053 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Scn11aQ9R053 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Scn11aQ9R053 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Scn11aQ9R053 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Scn11aQ9R053 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC26.64■■□□□ 1.86
Scn11aQ9R053 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC26.64■■□□□ 1.85
Scn11aQ9R053 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Scn11aQ9R053 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
Scn11aQ9R053 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Scn11aQ9R053 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
Scn11aQ9R053 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Scn11aQ9R053 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Scn11aQ9R053 Nsd1-206ENSMUST00000224918 1001 ntBASIC26.63■■□□□ 1.85
Scn11aQ9R053 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC26.62■■□□□ 1.85
Scn11aQ9R053 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Scn11aQ9R053 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Scn11aQ9R053 Gm9959-201ENSMUST00000068277 390 ntBASIC26.62■■□□□ 1.85
Scn11aQ9R053 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC26.61■■□□□ 1.85
Scn11aQ9R053 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC26.61■■□□□ 1.85
Scn11aQ9R053 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Scn11aQ9R053 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC26.61■■□□□ 1.85
Scn11aQ9R053 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Scn11aQ9R053 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
Scn11aQ9R053 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
Scn11aQ9R053 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
Scn11aQ9R053 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Scn11aQ9R053 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Scn11aQ9R053 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Scn11aQ9R053 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Scn11aQ9R053 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Scn11aQ9R053 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
Scn11aQ9R053 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
Scn11aQ9R053 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Scn11aQ9R053 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Scn11aQ9R053 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Scn11aQ9R053 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Scn11aQ9R053 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Scn11aQ9R053 Gm28731-201ENSMUST00000185564 1569 ntBASIC26.58■■□□□ 1.85
Scn11aQ9R053 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
Scn11aQ9R053 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
Scn11aQ9R053 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
Scn11aQ9R053 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC26.58■■□□□ 1.84
Scn11aQ9R053 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
Scn11aQ9R053 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Scn11aQ9R053 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Scn11aQ9R053 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Scn11aQ9R053 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC26.56■■□□□ 1.84
Scn11aQ9R053 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn11aQ9R053 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn11aQ9R053 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn11aQ9R053 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn11aQ9R053 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn11aQ9R053 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC26.54■■□□□ 1.84
Scn11aQ9R053 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Scn11aQ9R053 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms