Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC23.21■■□□□ 1.31
Scn5aQ9JJV9 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC23.21■■□□□ 1.31
Scn5aQ9JJV9 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
Scn5aQ9JJV9 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn5aQ9JJV9 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn5aQ9JJV9 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn5aQ9JJV9 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
Scn5aQ9JJV9 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC23.18■■□□□ 1.3
Scn5aQ9JJV9 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC23.18■■□□□ 1.3
Scn5aQ9JJV9 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn5aQ9JJV9 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Scn5aQ9JJV9 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Scn5aQ9JJV9 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Scn5aQ9JJV9 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Scn5aQ9JJV9 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
Scn5aQ9JJV9 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Scn5aQ9JJV9 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC23.16■■□□□ 1.3
Scn5aQ9JJV9 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
Scn5aQ9JJV9 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Scn5aQ9JJV9 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC23.16■■□□□ 1.3
Scn5aQ9JJV9 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Scn5aQ9JJV9 Gm28536-201ENSMUST00000190971 1317 ntBASIC23.16■■□□□ 1.3
Scn5aQ9JJV9 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn5aQ9JJV9 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn5aQ9JJV9 Etf1-202ENSMUST00000180351 108 ntBASIC23.15■■□□□ 1.3
Scn5aQ9JJV9 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
Scn5aQ9JJV9 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC23.15■■□□□ 1.3
Scn5aQ9JJV9 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Scn5aQ9JJV9 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn5aQ9JJV9 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Scn5aQ9JJV9 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Scn5aQ9JJV9 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
Scn5aQ9JJV9 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC23.13■■□□□ 1.29
Scn5aQ9JJV9 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Scn5aQ9JJV9 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC23.13■■□□□ 1.29
Scn5aQ9JJV9 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Scn5aQ9JJV9 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
Scn5aQ9JJV9 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn5aQ9JJV9 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn5aQ9JJV9 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC23.13■■□□□ 1.29
Scn5aQ9JJV9 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn5aQ9JJV9 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC23.12■■□□□ 1.29
Scn5aQ9JJV9 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Scn5aQ9JJV9 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Scn5aQ9JJV9 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Scn5aQ9JJV9 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Scn5aQ9JJV9 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Scn5aQ9JJV9 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC23.11■■□□□ 1.29
Scn5aQ9JJV9 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Scn5aQ9JJV9 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Scn5aQ9JJV9 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
Scn5aQ9JJV9 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Scn5aQ9JJV9 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC23.09■■□□□ 1.29
Scn5aQ9JJV9 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Scn5aQ9JJV9 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Scn5aQ9JJV9 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Scn5aQ9JJV9 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Scn5aQ9JJV9 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Scn5aQ9JJV9 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
Scn5aQ9JJV9 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
Scn5aQ9JJV9 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Scn5aQ9JJV9 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC23.08■■□□□ 1.28
Scn5aQ9JJV9 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Scn5aQ9JJV9 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC23.07■■□□□ 1.28
Scn5aQ9JJV9 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Scn5aQ9JJV9 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
Scn5aQ9JJV9 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC23.06■■□□□ 1.28
Scn5aQ9JJV9 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Scn5aQ9JJV9 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC23.06■■□□□ 1.28
Scn5aQ9JJV9 AC153524.1-201ENSMUST00000220436 1935 ntBASIC23.06■■□□□ 1.28
Scn5aQ9JJV9 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC23.06■■□□□ 1.28
Scn5aQ9JJV9 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Scn5aQ9JJV9 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Scn5aQ9JJV9 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Scn5aQ9JJV9 Gm16464-201ENSMUST00000117815 1095 ntBASIC23.05■■□□□ 1.28
Scn5aQ9JJV9 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Scn5aQ9JJV9 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC23.05■■□□□ 1.28
Scn5aQ9JJV9 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Scn5aQ9JJV9 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Scn5aQ9JJV9 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn5aQ9JJV9 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Scn5aQ9JJV9 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Scn5aQ9JJV9 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
Scn5aQ9JJV9 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Scn5aQ9JJV9 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC23.03■■□□□ 1.28
Scn5aQ9JJV9 Gm21956-201ENSMUST00000179946 522 ntBASIC23.03■■□□□ 1.28
Scn5aQ9JJV9 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Scn5aQ9JJV9 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Scn5aQ9JJV9 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Scn5aQ9JJV9 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms