Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Chmp7Q8R1T1 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC28.41■■■□□ 2.14
Chmp7Q8R1T1 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Chmp7Q8R1T1 Etf1-202ENSMUST00000180351 108 ntBASIC28.4■■■□□ 2.14
Chmp7Q8R1T1 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC28.4■■■□□ 2.14
Chmp7Q8R1T1 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
Chmp7Q8R1T1 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Chmp7Q8R1T1 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Chmp7Q8R1T1 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
Chmp7Q8R1T1 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
Chmp7Q8R1T1 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC28.38■■■□□ 2.13
Chmp7Q8R1T1 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
Chmp7Q8R1T1 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Chmp7Q8R1T1 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Chmp7Q8R1T1 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Chmp7Q8R1T1 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC28.37■■■□□ 2.13
Chmp7Q8R1T1 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC28.37■■■□□ 2.13
Chmp7Q8R1T1 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
Chmp7Q8R1T1 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Chmp7Q8R1T1 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Chmp7Q8R1T1 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Chmp7Q8R1T1 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Chmp7Q8R1T1 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Chmp7Q8R1T1 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Chmp7Q8R1T1 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC28.36■■■□□ 2.13
Chmp7Q8R1T1 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC28.36■■■□□ 2.13
Chmp7Q8R1T1 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Chmp7Q8R1T1 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
Chmp7Q8R1T1 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Chmp7Q8R1T1 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC28.34■■■□□ 2.13
Chmp7Q8R1T1 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC28.34■■■□□ 2.13
Chmp7Q8R1T1 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Chmp7Q8R1T1 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Chmp7Q8R1T1 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Chmp7Q8R1T1 Gm16464-201ENSMUST00000117815 1095 ntBASIC28.33■■■□□ 2.13
Chmp7Q8R1T1 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Chmp7Q8R1T1 AC153524.1-201ENSMUST00000220436 1935 ntBASIC28.33■■■□□ 2.13
Chmp7Q8R1T1 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Chmp7Q8R1T1 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC28.32■■■□□ 2.12
Chmp7Q8R1T1 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Chmp7Q8R1T1 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
Chmp7Q8R1T1 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Chmp7Q8R1T1 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
Chmp7Q8R1T1 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC28.3■■■□□ 2.12
Chmp7Q8R1T1 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Chmp7Q8R1T1 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Chmp7Q8R1T1 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC28.3■■■□□ 2.12
Chmp7Q8R1T1 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC28.3■■■□□ 2.12
Chmp7Q8R1T1 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
Chmp7Q8R1T1 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Chmp7Q8R1T1 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC28.29■■■□□ 2.12
Chmp7Q8R1T1 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Chmp7Q8R1T1 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Chmp7Q8R1T1 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Chmp7Q8R1T1 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
Chmp7Q8R1T1 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Chmp7Q8R1T1 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Chmp7Q8R1T1 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC28.28■■■□□ 2.12
Chmp7Q8R1T1 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Chmp7Q8R1T1 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
Chmp7Q8R1T1 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Chmp7Q8R1T1 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Chmp7Q8R1T1 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Chmp7Q8R1T1 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC28.27■■■□□ 2.12
Chmp7Q8R1T1 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Chmp7Q8R1T1 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC28.27■■■□□ 2.12
Chmp7Q8R1T1 Gm5131-201ENSMUST00000212776 1238 ntBASIC28.27■■■□□ 2.12
Chmp7Q8R1T1 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC28.27■■■□□ 2.12
Chmp7Q8R1T1 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
Chmp7Q8R1T1 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
Chmp7Q8R1T1 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC28.26■■■□□ 2.11
Chmp7Q8R1T1 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
Chmp7Q8R1T1 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
Chmp7Q8R1T1 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC28.26■■■□□ 2.11
Chmp7Q8R1T1 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC28.25■■■□□ 2.11
Chmp7Q8R1T1 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Chmp7Q8R1T1 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Chmp7Q8R1T1 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC28.24■■■□□ 2.11
Chmp7Q8R1T1 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC28.24■■■□□ 2.11
Chmp7Q8R1T1 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Chmp7Q8R1T1 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
Chmp7Q8R1T1 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC28.23■■■□□ 2.11
Chmp7Q8R1T1 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Chmp7Q8R1T1 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC28.22■■■□□ 2.11
Chmp7Q8R1T1 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
Chmp7Q8R1T1 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Chmp7Q8R1T1 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
Chmp7Q8R1T1 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Chmp7Q8R1T1 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Chmp7Q8R1T1 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Chmp7Q8R1T1 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC28.21■■■□□ 2.11
Chmp7Q8R1T1 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
Chmp7Q8R1T1 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
Chmp7Q8R1T1 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
Chmp7Q8R1T1 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Chmp7Q8R1T1 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.1
Chmp7Q8R1T1 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Chmp7Q8R1T1 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC28.19■■■□□ 2.1
Chmp7Q8R1T1 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC28.19■■■□□ 2.1
Chmp7Q8R1T1 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms